Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V _ __init__() (hmclab.Distributions._AbstractDistribution method) (hmclab.Distributions.AdditiveDistribution method) (hmclab.Distributions.BayesRule method) (hmclab.Distributions.CompositeDistribution method) (hmclab.Distributions.Himmelblau method) (hmclab.Distributions.Laplace method) (hmclab.Distributions.LinearMatrix method) (hmclab.Distributions.Normal method) (hmclab.Distributions.SourceLocation2D method) (hmclab.Distributions.SourceLocation3D method) (hmclab.Distributions.StandardNormal1D method) (hmclab.Distributions.Uniform method) (hmclab.MassMatrices._AbstractMassMatrix method) (hmclab.MassMatrices.Diagonal method) (hmclab.MassMatrices.Unit method) (hmclab.Samplers._AbstractSampler method) (hmclab.Samplers.HMC method) (hmclab.Samplers.RWMH method) (hmclab.Samples method) _AbstractDistribution (class in hmclab.Distributions) _AbstractMassMatrix (class in hmclab.MassMatrices) _AbstractSampler (class in hmclab.Samplers) A acceptance_rates (hmclab.Samplers.HMC attribute) (hmclab.Samplers.RWMH attribute) accepted_proposals (hmclab.Samplers._AbstractSampler attribute) add_distribution() (hmclab.Distributions.AdditiveDistribution method) (hmclab.Distributions.BayesRule method) AdditiveDistribution (class in hmclab.Distributions) amount_of_steps (hmclab.Samplers.HMC attribute) amount_of_writes (hmclab.Samplers._AbstractSampler attribute) autotuning (hmclab.Samplers.HMC attribute) (hmclab.Samplers.RWMH attribute) B BayesRule (class in hmclab.Distributions) C collapse_bounds() (hmclab.Distributions.AdditiveDistribution method) (hmclab.Distributions.BayesRule method) (hmclab.Distributions.CompositeDistribution method) CompositeDistribution (class in hmclab.Distributions) corrector() (hmclab.Distributions._AbstractDistribution method) (hmclab.Distributions.AdditiveDistribution method) (hmclab.Distributions.BayesRule method) (hmclab.Distributions.CompositeDistribution method) (hmclab.Distributions.Himmelblau method) (hmclab.Distributions.Laplace method) (hmclab.Distributions.LinearMatrix method) (hmclab.Distributions.Normal method) (hmclab.Distributions.SourceLocation2D method) (hmclab.Distributions.SourceLocation3D method) (hmclab.Distributions.StandardNormal1D method) (hmclab.Distributions.Uniform method) covariance (hmclab.Distributions.Normal attribute) create_default() (hmclab.Distributions._AbstractDistribution static method) current_h (hmclab.Samplers.HMC attribute) current_k (hmclab.Samplers.HMC attribute) current_model (hmclab.Samplers._AbstractSampler attribute) current_momentum (hmclab.Samplers.HMC attribute) current_proposal (hmclab.Samplers._AbstractSampler attribute) current_proposal_after_thinning (hmclab.Samplers._AbstractSampler attribute) current_x (hmclab.Samplers._AbstractSampler attribute) D diagnostic_mode (hmclab.Samplers._AbstractSampler attribute) Diagonal (class in hmclab.MassMatrices) diagonal (hmclab.Distributions.Normal attribute) dimensions (hmclab.Distributions.StandardNormal1D attribute) (hmclab.Samplers._AbstractSampler attribute) dimensions() (hmclab.Distributions._AbstractDistribution method) (hmclab.Distributions.AdditiveDistribution method) (hmclab.Distributions.BayesRule method) (hmclab.Distributions.CompositeDistribution method) (hmclab.Distributions.Laplace method) (hmclab.Distributions.LinearMatrix method) (hmclab.Distributions.Normal method) (hmclab.Distributions.SourceLocation2D method) (hmclab.Distributions.SourceLocation3D method) (hmclab.Distributions.Uniform method) disable_progressbar (hmclab.Samplers._AbstractSampler attribute) dispersions (hmclab.Distributions.Laplace attribute) distribution (hmclab.Samplers._AbstractSampler attribute) E end_time (hmclab.Samplers._AbstractSampler attribute) enumerated_dimensions (hmclab.Distributions.CompositeDistribution attribute) enumerated_dimensions_cumulative (hmclab.Distributions.CompositeDistribution attribute) exchange_interval (hmclab.Samplers._AbstractSampler attribute) exchange_schedule (hmclab.Samplers._AbstractSampler attribute) F functions_to_diagnose (hmclab.Samplers._AbstractSampler attribute) G generate() (hmclab.Distributions._AbstractDistribution method) generate_momentum() (hmclab.MassMatrices.Diagonal method) (hmclab.MassMatrices.Unit method) gradient() (hmclab.Distributions._AbstractDistribution method) (hmclab.Distributions.Himmelblau method) (hmclab.Distributions.Laplace method) (hmclab.Distributions.Normal method) (hmclab.Distributions.StandardNormal1D method) (hmclab.Distributions.Uniform method) gradient_descent() (in module hmclab.Optimizers) H Himmelblau (class in hmclab.Distributions) HMC (class in hmclab.Samplers) hmclab module hmclab.Distributions module hmclab.MassMatrices module hmclab.Optimizers module hmclab.Samplers module hmclab.Visualization module I infer_velocity (hmclab.Distributions.SourceLocation2D attribute) (hmclab.Distributions.SourceLocation3D attribute) inverse_covariance (hmclab.Distributions.Normal attribute) inverse_dispersions (hmclab.Distributions.Laplace attribute) K kinetic_energy() (hmclab.MassMatrices._AbstractMassMatrix method) (hmclab.MassMatrices.Diagonal method) (hmclab.MassMatrices.Unit method) kinetic_energy_gradient() (hmclab.MassMatrices._AbstractMassMatrix method) (hmclab.MassMatrices.Diagonal method) (hmclab.MassMatrices.Unit method) L Laplace (class in hmclab.Distributions) learning_rate (hmclab.Samplers.HMC attribute) (hmclab.Samplers.RWMH attribute) LinearMatrix (class in hmclab.Distributions) lower_bounds (hmclab.Distributions._AbstractDistribution attribute) M marginal() (hmclab.Visualization method) marginal_grid() (hmclab.Visualization method) mass_matrix (hmclab.Samplers.HMC attribute) matrix (hmclab.MassMatrices.Unit property) max_time (hmclab.Samplers._AbstractSampler attribute) mean (hmclab.Distributions.StandardNormal1D attribute) means (hmclab.Distributions.Laplace attribute) (hmclab.Distributions.Normal attribute) minimal_stepsize (hmclab.Samplers.HMC attribute) (hmclab.Samplers.RWMH attribute) misfit() (hmclab.Distributions._AbstractDistribution method) (hmclab.Distributions.Himmelblau method) (hmclab.Distributions.Laplace method) (hmclab.Distributions.Normal method) (hmclab.Distributions.StandardNormal1D method) (hmclab.Distributions.Uniform method) misfit_bounds() (hmclab.Distributions._AbstractDistribution method) (hmclab.Distributions.AdditiveDistribution method) (hmclab.Distributions.BayesRule method) (hmclab.Distributions.CompositeDistribution method) (hmclab.Distributions.Himmelblau method) (hmclab.Distributions.Laplace method) (hmclab.Distributions.LinearMatrix method) (hmclab.Distributions.Normal method) (hmclab.Distributions.SourceLocation2D method) (hmclab.Distributions.SourceLocation3D method) (hmclab.Distributions.StandardNormal1D method) (hmclab.Distributions.Uniform method) module hmclab hmclab.Distributions hmclab.MassMatrices hmclab.Optimizers hmclab.Samplers hmclab.Visualization N name (hmclab.Distributions._AbstractDistribution attribute) (hmclab.Distributions.StandardNormal1D attribute) (hmclab.Samplers._AbstractSampler attribute) (hmclab.Samplers.HMC attribute) Normal (class in hmclab.Distributions) normalization_constant (hmclab.Distributions.Normal attribute) normalize() (hmclab.Distributions._AbstractDistribution method) (hmclab.Distributions.AdditiveDistribution method) (hmclab.Distributions.BayesRule method) (hmclab.Distributions.CompositeDistribution method) (hmclab.Distributions.Himmelblau method) (hmclab.Distributions.LinearMatrix method) (hmclab.Distributions.SourceLocation2D method) (hmclab.Distributions.SourceLocation3D method) (hmclab.Distributions.StandardNormal1D method) (hmclab.Distributions.Uniform method) normalized (hmclab.Distributions._AbstractDistribution attribute) O online_thinning (hmclab.Samplers._AbstractSampler attribute) P parallel (hmclab.Samplers._AbstractSampler attribute) pipe_matrix (hmclab.Samplers._AbstractSampler attribute) print_results() (hmclab.Samplers._AbstractSampler method) (hmclab.Samplers.HMC method) (hmclab.Samplers.RWMH method) progressbar_refresh_rate (hmclab.Samplers._AbstractSampler attribute) proposals (hmclab.Samplers._AbstractSampler attribute) proposed_h (hmclab.Samplers.HMC attribute) proposed_k (hmclab.Samplers.HMC attribute) proposed_model (hmclab.Samplers._AbstractSampler attribute) proposed_momentum (hmclab.Samplers.HMC attribute) proposed_x (hmclab.Samplers._AbstractSampler attribute) R ram_buffer (hmclab.Samplers._AbstractSampler attribute) ram_buffer_size (hmclab.Samplers._AbstractSampler attribute) randomize_stepsize (hmclab.Samplers.HMC attribute) RWMH (class in hmclab.Samplers) S sample() (hmclab.Samplers.HMC method) (hmclab.Samplers.RWMH method) sampler_index (hmclab.Samplers._AbstractSampler attribute) sampler_specific_functions_to_diagnose (hmclab.Samplers._AbstractSampler attribute) Samples (class in hmclab) samples_hdf5_dataset (hmclab.Samplers._AbstractSampler attribute) samples_hdf5_filehandle (hmclab.Samplers._AbstractSampler attribute) samples_hdf5_filename (hmclab.Samplers._AbstractSampler attribute) SourceLocation2D (class in hmclab.Distributions) SourceLocation3D (class in hmclab.Distributions) StandardNormal1D (class in hmclab.Distributions) start_time (hmclab.Samplers._AbstractSampler attribute) std (hmclab.Distributions.StandardNormal1D attribute) stepsize (hmclab.Samplers.HMC attribute) (hmclab.Samplers.RWMH attribute) stepsizes (hmclab.Samplers.HMC attribute) (hmclab.Samplers.RWMH attribute) T target_acceptance_rate (hmclab.Samplers.HMC attribute) (hmclab.Samplers.RWMH attribute) temperature (hmclab.Distributions.Himmelblau attribute) times_started (hmclab.Samplers._AbstractSampler attribute) U Uniform (class in hmclab.Distributions) Unit (class in hmclab.MassMatrices) update_bounds() (hmclab.Distributions._AbstractDistribution method) (hmclab.Distributions.AdditiveDistribution method) (hmclab.Distributions.BayesRule method) (hmclab.Distributions.CompositeDistribution method) (hmclab.Distributions.Himmelblau method) (hmclab.Distributions.Laplace method) (hmclab.Distributions.LinearMatrix method) (hmclab.Distributions.Normal method) (hmclab.Distributions.SourceLocation2D method) (hmclab.Distributions.SourceLocation3D method) (hmclab.Distributions.StandardNormal1D method) (hmclab.Distributions.Uniform method) upper_bounds (hmclab.Distributions._AbstractDistribution attribute) V visualize_2_dimensions() (hmclab.Visualization method)